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basespace sequencing hub  (Illumina Inc)


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    Structured Review

    Illumina Inc basespace sequencing hub
    Basespace Sequencing Hub, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/basespace+sequence+hub/basespace+sequence+hub/pmc12173752-62-6-6
    Average 90 stars, based on 1 article reviews
    basespace sequencing hub - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Sequencing:

    Article Title: Integrating Artificial Intelligence in Next-Generation Sequencing: Advances, Challenges, and Future Directions
    Article Snippet: .. Platforms such as Illumina BaseSpace Sequence Hub and DNAnexus enable bioinformatics analyses without requiring advanced programming skills or command-line tools. ..

    Article Title: Semaphorin 3A and 3F overexpression in TIE2 hyperactive endothelial cells contribute to the pathological lumen expansion in venous malformation
    Article Snippet: .. Fastq files for downstream data analysis were automatically generated via the Illumina BaseSpace Sequence Hub after sequencing. ..

    Article Title: Signature gene expression model for quantitative evaluation of MASH-like liver injury in mice.
    Article Snippet: Metabolic dysfunction-associated steatotic liver disease (MASLD) is a spectrum of chronic pathologic conditions strongly associated with metabolic syndrome and affects approximately 38% of the global population.. Untreated MASLD may progress to metabolic dysfunction-associated steatohepatitis (MASH), fibrosis, and cirrhosis and is currently recognized as one of the main risk factors for hepatocellular carcinoma (HCC).. The molecular determinants of MASLD stratification are not clearly defined and require additional investigation.

    Article Title: Effect of Topical Corticosteroid Treatment on microRNA Expression in Infants with Atopic Dermatitis
    Article Snippet: Sequencing was performed as previously described ( ) using the Illumina MiSeq sequencing platform in single-end mode for 50 cycles, following the manufacturer’s instructions. .. Data were stored and managed using BaseSpace Sequence Hub (Illumina). ..

    Article Title: Impact of Low-Starch Dietary Modifications on Faecal Microbiota Composition and Gastric Disease Scores in Performance Horses.
    Article Snippet: Faecal bacterial communities were profiled by 2 × 250 bp Illumina® (San Diego, CA, USA) next-generation Miseq amplicon sequencing of the V3–V4 region of the 16S rRNA gene. .. We downloaded demultiplexed paired-end sequences, with non-biological nucleotides removed, from the EquiBiome® Illumina® BaseSpace Sequence Hub in FASTQ format for microbiota community analyses. .. We performed all microbiota analyses on RStudio (v.4.3.1), using the dada2 package [39] (v.1.26) for initial filtering, trimming, and merging, sequence table construction, and chimera removal stages.

    Article Title:
    Article Snippet: Sequence Data Analysis Samples were sequenced on Illumina Nextseq 550 platform. .. Resultant base calls files were demultiplexed and converted to fastq files via BaseSpace Sequence Hub (Illumina, San Diego, USA) fastq generator. ..

    Article Title: Immunomodulation of inflammatory responses preserves retinal integrity in murine models of pericyte-depletion retinopathy.
    Article Snippet: Equimolar amounts of each library were sequenced on an Illumina NextSeq 2000 instrument controlled by the NextSeq 2000 Control Software (NCS) v1.4.1.39716, using two 50 cycles P3 Flow Cells with the dual index, single-read (SR) run parameters. .. FASTQ file processing: Alignment and differential expression analysis The Illumina BaseSpace Sequence Hub was utilized to process the Fastq files obtained from Illumina sequencing. .. FASTQ file processing: Alignment and differential expression analysis The Illumina BaseSpace Sequence Hub was utilized to process the Fastq files obtained from Illumina sequencing.

    other:

    Article Title: Wastewater dataset on the SARS-CoV-2 sublineages circulating in Central Arkansas, USA, post-COVID-19 pandemic
    Article Snippet: DRAGEN COVID Lineage is available on the Illumina’s BaseSpaceTM Sequence Hub ( https://basespace.illumina.com/ ).

    Generated:

    Article Title: Semaphorin 3A and 3F overexpression in TIE2 hyperactive endothelial cells contribute to the pathological lumen expansion in venous malformation
    Article Snippet: .. Fastq files for downstream data analysis were automatically generated via the Illumina BaseSpace Sequence Hub after sequencing. ..

    Quantitative Proteomics:

    Article Title: Immunomodulation of inflammatory responses preserves retinal integrity in murine models of pericyte-depletion retinopathy.
    Article Snippet: Equimolar amounts of each library were sequenced on an Illumina NextSeq 2000 instrument controlled by the NextSeq 2000 Control Software (NCS) v1.4.1.39716, using two 50 cycles P3 Flow Cells with the dual index, single-read (SR) run parameters. .. FASTQ file processing: Alignment and differential expression analysis The Illumina BaseSpace Sequence Hub was utilized to process the Fastq files obtained from Illumina sequencing. .. FASTQ file processing: Alignment and differential expression analysis The Illumina BaseSpace Sequence Hub was utilized to process the Fastq files obtained from Illumina sequencing.



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